Forest L. Rohwer: search on Z-Library

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1

Opinion: Viral metagenomics

Edwards, Robert A., Rohwer, Forest

Journal:

Nature Reviews Microbiology

Year:

2005

Language:

english

File:

PDF, 532 KB

english, 2005

2

Viruses manipulate the marine environment

Rohwer, Forest, Thurber, Rebecca Vega

Journal:

Year:

2009

Language:

english

File:

PDF, 2.32 MB

english, 2009

3

Multilevel Research Strategies and Biological Systems

O’Malley, Maureen A., Brigandt, Ingo, Love, Alan C., Crawford, John W., Gilbert, Jack A., Knight, Rob, Mitchell, Sandra D., Rohwer, Forest

Journal:

Philosophy of Science

Year:

2014

Language:

english

File:

PDF, 1.31 MB

english, 2014

4

Development and use of personalized bacteriophage-based therapeutic cocktails to treat a patient with a disseminated resistant Acinetobacter baumannii infection

Schooley, Robert T., Biswas, Biswajit, Gill, Jason J., Hernandez-Morales, Adriana, Lancaster, Jacob, Lessor, Lauren, Barr, Jeremy J., Reed, Sharon L., Rohwer, Forest, Benler, Sean, Segall, Anca M., Ta

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2017

Language:

english

File:

PDF, 1.44 MB

english, 2017

5

Viruses as Winners in the Game of Life

Cobián Güemes, Ana Georgina, Youle, Merry, Cantú, Vito Adrian, Felts, Ben, Nulton, James, Rohwer, Forest

Journal:

Annual Review of Virology

Year:

2016

Language:

english

File:

PDF, 376 KB

english, 2016

6

Knowles &Rohwer reply

Knowles, Ben, Rohwer, Forest

Journal:

Year:

2017

Language:

english

File:

PDF, 1.56 MB

english, 2017

7

Viral communities associated with healthy and bleaching corals

Kristen L. Marhaver, Robert A. Edwards, Forest Rohwer

Journal:

Environmental Microbiology

Year:

2008

Language:

english

File:

PDF, 234 KB

english, 2008

8

Marine phage genomics

John H Paul, Matthew B Sullivan, Anca M Segall, Forest Rohwer

Journal:

Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology

Year:

2002

Language:

english

File:

PDF, 344 KB

english, 2002

9

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation

Quinn, Robert A, Whiteson, Katrine, Lim, Yan-Wei, Salamon, Peter, Bailey, Barbara, Mienardi, Simone, Sanchez, Savannah E, Blake, Don, Conrad, Doug, Rohwer, Forest

Journal:

The ISME Journal

Year:

2014

Language:

english

File:

PDF, 1.70 MB

english, 2014

10

Consider something viral in your research

Rohwer, Forest, Youle, Merry

Journal:

Nature Reviews Microbiology

Year:

2011

Language:

english

File:

PDF, 369 KB

english, 2011

11

The origins of ambient biological sound from coral reef ecosystems in the Line Islands archipelago

Freeman, Simon E., Rohwer, Forest L., D'Spain, Gerald L., Friedlander, Alan M., Gregg, Allison K., Sandin, Stuart A., Buckingham, Michael J.

Journal:

The Journal of the Acoustical Society of America

Year:

2014

Language:

english

File:

PDF, 3.69 MB

english, 2014

12

A Winogradsky-based culture system shows an association between microbial fermentation and cystic fibrosis exacerbation

Quinn, Robert A, Whiteson, Katrine, Lim, Yan-Wei, Salamon, Peter, Bailey, Barbara, Mienardi, Simone, Sanchez, Savannah E, Blake, Don, Conrad, Doug, Rohwer, Forest

Journal:

The ISME Journal

Year:

2015

Language:

english

File:

PDF, 61 KB

english, 2015

13

Re-evaluating the health of coral reef communities: baselines and evidence for human impacts across the central Pacific

Smith, Jennifer E., Brainard, Rusty, Carter, Amanda, Grillo, Saray, Edwards, Clinton, Harris, Jill, Lewis, Levi, Obura, David, Rohwer, Forest, Sala, Enric, Vroom, Peter S., Sandin, Stuart

Journal:

Proceedings Biological Sciences

Year:

2016

Language:

english

File:

PDF, 1.50 MB

english, 2016

14

Application of Finite-Time and Control Thermodynamics to Biological Processes at Multiple Scales

Roach, Ty N. F., Salamon, Peter, Nulton, James, Andresen, Bjarne, Felts, Ben, Haas, Andreas, Calhoun, Sandi, Robinett, Nathan, Rohwer, Forest

Journal:

Journal of Non-Equilibrium Thermodynamics

Year:

2018

Language:

english

File:

PDF, 698 KB

english, 2018

15

Erratum for Schooley et al., “Development and Use of Personalized Bacteriophage-Based Therapeutic Cocktails To Treat a Patient with a Disseminated Resistant Acinetobacter baumannii Infection”

Schooley, Robert T., Biswas, Biswajit, Gill, Jason J., Hernandez-Morales, Adriana, Lancaster, Jacob, Lessor, Lauren, Barr, Jeremy J., Reed, Sharon L., Rohwer, Forest, Benler, Sean, Segall, Anca M., Ta

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2018

Language:

english

File:

PDF, 115 KB

english, 2018

16

Microbial communities associated with skeletal tumors on Porites compressa

Mya Breitbart, Ranjeet Bhagooli, Sean Griffin, Ian Johnston, Forest Rohwer

Journal:

FEMS Microbiology Letters

Year:

2005

Language:

english

File:

PDF, 174 KB

english, 2005

17

Building an OptIPlanet collaboratory to support microbial metagenomics

Larry Smarr, Paul Gilna, Phil Papadopoulos, Thomas A. DeFanti, Greg Hidley, John Wooley, E. Virginia Armbrust, Forest Rohwer, Eric Frost

Journal:

Future Generation Computer Systems

Year:

2009

Language:

english

File:

PDF, 3.77 MB

english, 2009

18

Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality

Jennifer E. Smith, Morrigan Shaw, Rob A. Edwards, David Obura, Olga Pantos, Enric Sala, Stuart A. Sandin, Steven Smriga, Mark Hatay, Forest L. Rohwer

Journal:

Ecology Letters

Year:

2006

Language:

english

File:

PDF, 351 KB

english, 2006

19

Widespread association of a Rickettsiales-like bacterium with reef-building corals

Veronica Casas, David I. Kline, Linda Wegley, Yanan Yu, Mya Breitbart, Forest Rohwer

Journal:

Environmental Microbiology

Year:

2004

Language:

english

File:

PDF, 201 KB

english, 2004

20

Rapid estimation of microbial numbers in water using bulk fluorescence

Linda Wegley, Pamela Mosier-Boss, Stephen Lieberman, John Andrews, Amanda Graff-Baker, Forest Rohwer

Journal:

Environmental Microbiology

Year:

2006

Language:

english

File:

PDF, 222 KB

english, 2006

21

Real-time microbial ecology

Journal:

Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 89 KB

english, 2007

22

Metagenomic analysis of the microbial community associated with the coral Porites astreoides

Linda Wegley, Robert Edwards, Beltran Rodriguez-Brito, Hong Liu, Forest Rohwer

Journal:

Environmental Microbiology

Year:

2007

Language:

english

File:

PDF, 313 KB

english, 2007

23

Metagenomic and stable isotopic analyses of modern freshwater microbialites in Cuatro Ciénegas, Mexico

Mya Breitbart, Ana Hoare, Anthony Nitti, Janet Siefert, Matthew Haynes, Elizabeth Dinsdale, Robert Edwards, Valeria Souza, Forest Rohwer, David Hollander

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 652 KB

english, 2009

24

Metagenomic signatures of 86 microbial and viral metagenomes

Dana Willner, Rebecca Vega Thurber, Forest Rohwer

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 1.45 MB

english, 2009

25

Metagenomic analysis of stressed coral holobionts

Rebecca Vega Thurber, Dana Willner-Hall, Beltran Rodriguez-Mueller, Christelle Desnues, Robert A. Edwards, Florent Angly, Elizabeth Dinsdale, Linda Kelly, Forest Rohwer

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 685 KB

english, 2009

26

Genomic analysis of multiple Roseophage SIO1 strains

Florent Angly, Merry Youle, Bahador Nosrat, Shailaja Srinagesh, Beltran Rodriguez-Brito, Patrick McNairnie, Gordafaried Deyanat-Yazdi, Mya Breitbart, Forest Rohwer

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 896 KB

english, 2009

27

Roles of viruses in the environment

Forest Rohwer, David Prangishvili, Debbie Lindell

Journal:

Environmental Microbiology

Year:

2009

Language:

english

File:

PDF, 192 KB

english, 2009

28

Metatranscriptomic array analysis of ‘Candidatus Accumulibacter phosphatis’-enriched enhanced biological phosphorus removal sludge

Shaomei He, Victor Kunin, Matthew Haynes, Hector Garcia Martin, Natalia Ivanova, Forest Rohwer, Philip Hugenholtz, Katherine D. McMahon

Journal:

Environmental Microbiology

Year:

2010

Language:

english

File:

PDF, 1.06 MB

english, 2010

29

Reconstructing a puzzle: existence of cyanophages containing both photosystem-I and photosystem-II gene suites inferred from oceanic metagenomic datasets

Ariella Alperovitch-Lavy, Itai Sharon, Forest Rohwer, Eva-Mari Aro, Fabian Glaser, Ron Milo, Nathan Nelson, Oded Béjà

Journal:

Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 1.75 MB

english, 2011

30

Microbial diversity associated with four functional groups of benthic reef algae and the reef-building coral Montastraea annularis

Katie L. Barott, Beltran Rodriguez-Brito, Jan Janouškovec, Kristen L. Marhaver, Jennifer E. Smith, Patrick Keeling, Forest L. Rohwer

Journal:

Environmental Microbiology

Year:

2011

Language:

english

File:

PDF, 820 KB

english, 2011

31

Global distribution of nearly identical phage-encoded DNA sequences

Mya Breitbart, Jon H Miyake, Forest Rohwer

Journal:

FEMS Microbiology Letters

Year:

2004

Language:

english

File:

PDF, 187 KB

english, 2004

32

Widespread occurrence of phage-encoded exotoxin genes in terrestrial and aquatic environments in Southern California

Veronica Casas, Jon Miyake, Heather Balsley, Julie Roark, Serena Telles, Steven Leeds, Ivan Zurita, Mya Breitbart, Doug Bartlett, Farooq Azam, Forest Rohwer

Journal:

FEMS Microbiology Letters

Year:

2006

Language:

english

File:

PDF, 204 KB

english, 2006

33

Power law rank–abundance models for marine phage communities

Karl Heinz Hoffmann, Beltran Rodriguez-Brito, Mya Breitbart, David Bangor, Florent Angly, Ben Felts, James Nulton, Forest Rohwer, Peter Salamon

Journal:

FEMS Microbiology Letters

Year:

2007

Language:

english

File:

PDF, 349 KB

english, 2007

34

Comparative metagenomics of microbial traits within oceanic viral communities

Sharon, Itai, Battchikova, Natalia, Aro, Eva-Mari, Giglione, Carmela, Meinnel, Thierry, Glaser, Fabian, Pinter, Ron Y, Breitbart, Mya, Rohwer, Forest, Béjà, Oded

Journal:

The ISME Journal

Year:

2011

Language:

english

File:

PDF, 15.29 MB

english, 2011

35

Photosystem I gene cassettes are present in marine virus genomes

Alperovitch, Ariella, Rohwer, Forest, Haynes, Matthew, Sharon, Itai, Glaser, Fabian, Atamna-Ismaeel, Nof, Pinter, Ron Y., Partensky, Frédéric, Koonin, Eugene V., Wolf, Yuri I.

Journal:

Year:

2009

Language:

english

File:

PDF, 780 KB

english, 2009

36

Viruses in the faecal microbiota of monozygotic twins and their mothers

Gordon, Jeffrey I., Reyes, Alejandro, Haynes, Matthew, Hanson, Nicole, Angly, Florent E., Heath, Andrew C., Rohwer, Forest

Journal:

Year:

2010

Language:

english

File:

PDF, 412 KB

english, 2010

37

Laboratory procedures to generate viral metagenomes

Thurber, Rebecca V, Haynes, Matthew, Breitbart, Mya, Wegley, Linda, Rohwer, Forest

Journal:

Nature Protocols

Year:

2009

Language:

english

File:

PDF, 584 KB

english, 2009

38

Explaining microbial population genomics through phage predation

Rodriguez-Valera, Francisco, Martin-Cuadrado, Ana-Belen, Rodriguez-Brito, Beltran, Pašić, Lejla, Thingstad, T. Frede, Rohwer, Forest, Mira, Alex

Journal:

Nature Reviews Microbiology

Year:

2009

Language:

english

File:

PDF, 1.03 MB

english, 2009

39

2004 ASM Conference on the New Phage Biology: the ‘Phage Summit’

Sankar Adhya, Lindsay Black, David Friedman, Graham Hatfull, Kenneth Kreuzer, Carl Merril, Amos Oppenheim, Forest Rohwer, Ry Young

Journal:

Molecular Microbiology

Year:

2005

Language:

english

File:

PDF, 412 KB

english, 2005

40

The Microbial Olympics

Youle, Merry, Rohwer, Forest, Stacy, Apollo, Whiteley, Marvin, Steel, Bradley C., Delalez, Nicolas J., Nord, Ashley L., Berry, Richard M., Armitage, Judith P., Kamoun, Sophien, Hogenhout, Saskia, Digg

Journal:

Nature Reviews Microbiology

Year:

2012

Language:

english

File:

PDF, 747 KB

english, 2012

41

IL-2 activation of a PI3K-dependent STAT3 serine phosphorylation pathway in primary human T cells

Michelle M. Fung, Forest Rohwer, Kathleen L. McGuire

Journal:

Cellular Signalling

Year:

2003

Language:

english

File:

PDF, 608 KB

english, 2003

42

TagCleaner: Identification and removal of tag sequences from genomic and metagenomic datasets

Robert Schmieder, Yan Wei Lim, Forest Rohwer, Robert Edwards

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.90 MB

english, 2010

43

FastGroup: A program to dereplicate libraries of 16S rDNA sequences

Victor Seguritan, Forest Rohwer

Journal:

BMC Bioinformatics

Year:

2001

Language:

english

File:

PDF, 1.18 MB

english, 2001

44

PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information

Florent Angly, Beltran Rodriguez-Brito, David Bangor, Pat McNairnie, Mya Breitbart, Peter Salamon, Ben Felts, James Nulton, Joseph Mahaffy, Forest Rohwer

Journal:

BMC Bioinformatics

Year:

2005

Language:

english

File:

PDF, 746 KB

english, 2005

45

An application of statistics to comparative metagenomics

Beltran Rodriguez-Brito, Forest Rohwer, Robert A Edwards

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 1.05 MB

english, 2006

46

FastGroupII: A web-based bioinformatics platform for analyses of large 16S rDNA libraries

Yanan Yu, Mya Breitbart, Pat McNairnie, Forest Rohwer

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 782 KB

english, 2006

47

Metagenomic islands of hyperhalophiles: the case ofSalinibacter ruber

Lejla Pašić, Beltran Rodriguez-Mueller, Ana-Belen Martin-Cuadrado, Alex Mira, Forest Rohwer, Francisco Rodriguez-Valera

Journal:

Year:

2009

Language:

english

File:

PDF, 2.63 MB

english, 2009

48

Using pyrosequencing to shed light on deep mine microbial ecology

Robert A Edwards, Beltran Rodriguez-Brito, Linda Wegley, Matthew Haynes, Mya Breitbart, Dean M Peterson, Martin O Saar, Scott Alexander, E Calvin Alexander, Forest Rohwer

Journal:

Year:

2006

Language:

english

File:

PDF, 1.71 MB

english, 2006

49

Global analysis of plastid diversity reveals apicomplexan-related lineages in coral reefs

Jan Janouškovec, Aleš Horák, Katie L. Barott, Forest L. Rohwer, Patrick J. Keeling

Journal:

Current Biology

Year:

2012

Language:

english

File:

PDF, 173 KB

english, 2012

50

Global distribution of nearly identical phage-encoded DNA sequences

Mya Breitbart, Jon H Miyake, Forest Rohwer

Journal:

FEMS Microbiology Letters

Year:

2004

Language:

english

File:

PDF, 191 KB

english, 2004

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